Me too, I've downgraded to 2.02 and read speed is relatively ok without fun_plug (about 25 MB/s which is still lower than with 2.00 but OK). With fun_plug active, it's somewhat lower at about ~17 MB/s and I'm using fun_plug because of Twonky DLNA server, which is idling at that moment.
Tempting to try 2.04b01 but there is no changelog available.
Maybe it's time to upgrade and buy another NAS. In my opininon, not much will be upgraded, it is getting slow a still a lot noisy. I've figured myself, that this has something to do with gigabit connection. Even with harddrives powered down and with no activity, the fan is spinning. System reports temperature about 40C, harddrives (when active) max 35C. The new DNS-320L is not faster (don't know why, it has 2x more RAM), it has simmilar small fan

And DNS-325 is a bit expensive - at that price, it's better to go with Qnap/Synology etc..