Same issue here. (rev B1 DIR-825)
Have a 50MBit cable modem(Ubee EVM3200) connection and it will be upgraded to well over 100Mbit soon
My "old" router a linksys wrt150n is not capable of those speeds on the wan side.
After seeing the charts & review on smallnetbuilder.com i decided to get the DIR-825.
The D-Link 825 is unable to handle any high single thread download.
My Linksys 150n is able to handle 5 Mb/s, the D-link 825 only does 2 Mb/s max.
It was worse before i disabled QOS and auto speed detect..
Fixing the wan speed to 100 MBit does increase the troughput, but i bought this thing for speeds over 100 Mbit.....
Is this a firmware issue? Or should i return it and get a Linksys 610N??

small update:
Just added a gigabit switch between the cable modem and the DIR-825 to make sure the problem is not the cable modem.
The 825 seems only happy with 100Mbit on the WAN side..... i even saw a slight increase in download speed with the switch.
DIR-825(100Mbit)------>3comGigabSwitch-------Ubee EVM3200(1000Mbit)