I agree, it is a risky operation without having a backup copy. In my case, since I just started consolidating misc. external drives to the NAS solution, I won't have a problem starting over (though I will loose some time).
I have now successfully finished the manual process. Here is what I did:
1. I downloaded fdisk2 from the thread I previously pointed out.
2. Created partitions in the same order and size as on the existing drive.
3. Manually added partition to the array waited for that to finish.
-- /usr/sbin/mdadm --manage --add /dev/md0 /dev/sdx2
4. Manually created ext3 filesystems on the other two partitions
-- /ffp/sbin/mke2fs -j /dev/sdx1
-- /ffp/sbin/mke2fs -j /dev/sdx4
5. Mounted the sdx4 partition
-- mount /dev/sdx4 /mnt/HD_x4
6. Forced an update of the hd_magic_num file for the web UI
-- /usr/sbin/hd_verify -w
Now the UI seems to happy about the state of the array. My only concern is about the steps in 4 and 5 that nobody seem to have mentioned as having to do. I am not sure if I am missing any more steps, e.g., should I be adding an fstab entry somewhere?