First - I'd like to make sure you understand the "redundancy benefit" of RAID1 - your data remains available with no interruption in the event of a drive failure - how important is the uninterrupted availability when the stored data is a backup?
To deal with your question ...
Yes - with RAID1 whatever information you write is duplicated "separately" (is that an oxymoron?) on each disk, using whatever capacity you set aside for RAID1, and any remaining capacity is used to create a JBOD volume.
Something else I'd like to draw to your attention.
In the event of a disk failure, any data stored in the JBOD volume will be lost, regardless of whether it was stored on the failed disk or not, and when you replace the failed disk, the JBOD will not be recreated, so the only way to recover that space will be to reformat the drives.
My advice is to think twice before using JBOD (or RAID0) - the only benefit to be had from either of these configurations is the available contiguous storage space - do you really need it?