update: i decided to do some further RAID testing with other hard drives, to see if the JBOD shows up again and to test some other things.
i set up a new RAID1 with two 80GB WD WD800JD-60LUA0 hard drives. not sure how to attach screenshots, but during the RAID1 setup i was presented with a "Size Settings" section where you set the size of the RAID1 (72 GB max in this case) and how to handle the remaining space (3 GB); the only options are to leave it unallocated or create a JBOD. i left it unallocated this time to see what happens- it just creates the RAID1 volume and then under the "Disk Management/Hard Drive Configuration" page there's an option to "Create A New Volume From The Remaining Available Storage Space", which i did, so now i also have a 3 GB JBOD volume.
what's interesting is that the 3 GB unallocated space in this case (with an 80 GB RAID1) appears to be the same as with my earlier 500 GB RAID1 (ie the unallocated space doesn't appear to scale according to the RAID1's size), so i wonder if that 3 GB is set aside by the DNS for some reason? i don't get it, i can still use this space for storage, so why can't it be added to the RAID1 volume? i agree, very strange!