As an update; The new beta firmware seems exactly the same except for the added USB support (I still have Sup for September). I waited about 4 hours and the ports still would not forward. I changed the "allow all" back to "deny all" and UT came right up. Rune is still down though.
For a more thorough test I tried disabling the following: SPI Firewall, Anti-Spoof checking, Game Fuel, dynamic fragmentation, WISH, UPnP, Multicast streams, access control, and remote access. I also removed my special apps, web filters, inbound filters, MAC Filters, and wireless encryption. I then removed the checks in all the ALG config items and changed the NAT filtering to endpoint independent on both TCP and UDP. Still no go. I know I may have come across abrupt but I am very frustrated at the fact I have now wasted so much time and money into these products only to have them fall short of what they are capable of doing (not to mention what they SHOULD be doing). If anyone from D-Link has any answers at all, I would appreciate the time for a reply. I do understand I am posting in a beta forum and as such not all functionality will work but I am here because the official 1.12 broke the router and I was/am willing to try anything. I have had this router three weeks and it only worked the first one. I also know you have plenty of people running packet sniffers and diagnostics, but if you need any more info, let me know. In the meantime I will try to re-flash with 1.12 and then do a factory reset before updating to 1.13 beta 2 again.