I have exactly the same issue, everyfew weeks my drives go degraded and I have to manually rebuild.
-Status lights are both blue
-Only one drive light is flashing
-Manual Rebuild fixes the issue.
-Breaks again after a week or two
-do it all over again

-Never happened pre 1.06
Please fix this ongoing issue, it has been reported MANY times, by many different people running MANY different harddrives.
I have the 1TB seagates in raid 1, and I have applied the firmware fix to those drives also...