Pretty sure its referring to the Shareport itself, but as you said, in context of the shareport app. Does it fit your symptom? Another words, can you see all the files in that list, and none of the files not in the list? If you connect a NAS or a computer set up to file share, does it work then with FLAC? If so, the difference would be the USB (AKA Shareport) so I think that page would be relevant. If not, I have no other ideas.